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Interactions in the Crystal Structure of Guanidinium Hydrogen Oxalate Monohydrate Derived from Experimental Charge Density Distribution |
Mateusz Pitak , Katarzyna Stadnicka |
Jagiellonian University, Faculty of Chemistry, Ingardena 3, Kraków 30-060, Poland |
Abstract |
High-resolution X-ray diffraction data were collected at 80K for guanidinium hydrogen oxalate monohydrate to obtain accurate crystal data and experimental charge density. The measurements were carried out using Nonius KappaCCD diffractometer equipped with Oxford 700 Cryostream Cooler. The studies were performed to explore inter- and intramolecular interactions. The crystal structure is built of layers, parallel to (-101), ~3.2 Å apart, formed by hydrogen oxalate anions, monoprotonated guanidinium cations and water molecules. In the crystal structure hydrogen oxalate anion is surrounded by three monoprotonated guanidinium cations and water molecule. All possible donors are involved in intermolecular hydrogen bonding. The hydrogen bonds are of N-H···O and O-H···O types. The guanidinium cation, with pseudo 3m symmetry, interacts with the hydrogen oxalate anions and water molecules through relatively strong hydrogen bonds of N-H···O type. The water molecules play exceptional function in the structure holding the layers together through O(4)water-H···O(22)oxalate and O(4)water-H···O(21)oxalate strong hydrogen bonds. O(22) atom accepts three hydrogen bonds (two N-H···O and one O-H···O type), whereas the remaining oxygen atoms of hydrogen oxalate carbonyl groups, O(11) and O(21), accept two hydrogen bonds of N-H···O type each. O(12) atom of hydroxyl group is a donor of hydrogen bond to oxygen atom O(4) of water molecule. Evaluation of experimental electron density and related properties such as moments and electrostatic potential was performed using Hansen-Coppens multipole formalism [1]. According to Bader's AIM theorem [2] topological analysis charge density led to determine quantitative parameters of the interactions, like value of electron density and Laplacian ρ(r) at the bond critical point's (BCP). Multipole refinement and the analysis of static densities was performed using the XD program suite [3] and all topological interactions (atomic volumes, atomic charges) were evaluated with program TOPXD [4]. [1] N. K. Hansen, P. Coppens, Acta Cryst. A 1978, 34. 909. [2] R. F. W. Bader, Atoms in Molecules - A Quantum Theory, Oxford University Press, 1995. [3] T. S. Koritsanszky et al., XD - A Computer Program Package for Multipole Refinement and Analysis of Electron Densities from Diffraction Data, 2003 [4] A. Volkov, C. Gatti, Y. Abramov, P. Coppens, Acta Cryst. A 2000, 56, 332. |
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Presentation: poster at 18th Conference on Physical Organic Chemistry, Posters, by Mateusz PitakSee On-line Journal of 18th Conference on Physical Organic Chemistry Submitted: 2006-05-31 23:49 Revised: 2009-06-07 00:44 |